Fiasco Tools

See the overview for more information on what's what.

The general purpose tools:

mri_anova	mri_esa	mri_pad	mri_smooth
mri_change_dims	mri_fft	mri_paste	mri_sort
mri_complex_to_scalar	mri_from_ascii	mri_permute	mri_splus_filter
mri_copy_chunk	mri_from_pdigm	mri_printfield	mri_subsample
mri_copy_dataset	mri_glm	mri_remap	mri_subset
mri_counter	mri_history	mri_resample	mri_svd
mri_delete_chunk	mri_interp	mri_rpn_math	mri_to_img
mri_describe	mri_kalman	mri_scan_fold	mri_type_convert
mri_destroy_dataset	mri_matmult	mri_setfield

The special purpose tools:

baseline	follow	nav_deghost	slow_ft
baseline2	generate_vmpfx_in	outlier	smartreader
blind_minimize	gift	overlay	smooth_missing
cardiopeaks	image_entropy	par_translate	smregpar
colorize	intsplit	partialk	smregpar3d
deghost	ireg	pfileorder	spiral
detrend	ireg3d	pghtoafni	spiral_reader
displace	iwarp	phadj	srecon
displace3d	matte	pullback	stats
estireg	meanc	reader	summary
estireg3d	meanc3d	recon	syncpeaks
estiwarp	morph	resppeaks	vmpfx
eventpeaks	mutual_information	sgrid

The scripts:

FIASCO	coregister_makeps.py	make_group_anat.csh	pick_n_voxels.py
afni_estireg3d.csh	coregister_struct_to_inplane.py	make_merged_maps.csh	pooled_mean.csh
align_by_permutation.py	cowarp_inplane.py	make_phase_cine.csh	pooled_stdv.csh
build_model_matrix.py	customize_local.py	merge_detrend.csh	pullback_roi_mask.py
calc_stats_over_roi.py	dataset_matches_env.py	merge_fisher.csh	renumber_ifiles.py
color_by_phase.csh	false_discovery.py	multi_runner.py	stats_to_floats.csh
combine.csh	groupcompare.csh	overlay.csh	testingroup.csh
convert_ifiles.py	icbm_to_tlrc.py	paste_split.py	tlrc_to_icbm.py
coregister.py	make_P_P_plots.csh	pca.py
coregister_inplane.py	make_cine.csh	physio_correct_triggered.py

Tools internal to FIASCO:

affinemap

buildhelp

byte_extract

scripthelp