Fiasco Tools

See the overview for more information on what's what.

The general purpose tools:

mri_anova	mri_esa	mri_pad	mri_smooth
mri_change_dims	mri_fft	mri_paste	mri_sort
mri_complex_to_scalar	mri_from_ascii	mri_permute	mri_splus_filter
mri_copy_chunk	mri_from_pdigm	mri_printfield	mri_subsample
mri_copy_dataset	mri_glm	mri_remap	mri_subset
mri_counter	mri_history	mri_resample	mri_svd
mri_delete_chunk	mri_interp	mri_rpn_math	mri_to_img
mri_describe	mri_kalman	mri_scan_fold	mri_type_convert
mri_destroy_dataset	mri_matmult	mri_setfield	mri_vector_extract

The special purpose tools:

3d_matrix	extract	outlier	slow_ft
baseline	follow	overlay	smartreader
baseline2	generate_vmpfx_in	par_translate	smooth_missing
blind_minimize	gift	partialk	smregpar
cardiopeaks	image_entropy	permute	smregpar3d
clip	imtops	pfileorder	spiral
colorize	intsplit	pghtoafni	spiral_reader
cross	ireg	pghtonifti	srecon
deghost	ireg3d	phadj	stats
detrend	iwarp	printmrifield	summary
displace	matte	pullback	syncpeaks
displace3d	meanc	reader	tsdeghost
estireg	meanc3d	recon	vmpfx
estireg3d	morph	remap	watershed
estiwarp	mutual_information	resppeaks
eventpeaks	nav_deghost	sgrid

The scripts:

FIASCO	coregister_makeps.py	make_group_anat.csh	plot_roi_event_response.py
afni_estireg3d.csh	coregister_struct_to_inplane.py	make_merged_maps.csh	plot_roi_time_series.py
afni_tshift.py	cowarp_inplane.py	make_phase_cine.csh	pooled_mean.csh
align_by_permutation.py	customize_local.py	merge_detrend.csh	pooled_stdv.csh
build_model_matrix.py	dataset_matches_env.py	merge_fisher.csh	pullback_roi_mask.py
calc_stats_over_roi.py	epoch_subset.py	multi_runner.py	renumber_ifiles.py
color_by_phase.csh	false_discovery.py	overlay.csh	stats_to_floats.csh
combine.csh	groupcompare.csh	paste_split.py	strip_skull.py
convert_ifiles.py	icbm_to_tlrc.py	pca.py	testingroup.csh
coregister.py	make_P_P_plots.csh	physio_correct_triggered.py	tlrc_to_icbm.py
coregister_inplane.py	make_cine.csh	pick_n_voxels.py

Tools internal to FIASCO:

affinemap

buildhelp

byte_extract

scripthelp